Changeset 5185 for ndgCommon


Ignore:
Timestamp:
08/04/09 15:09:07 (10 years ago)
Author:
cbyrom
Message:

Extend granulite to include the new spatial data terms: vertical extent
and spatial resolution. Update tests and test data to include these.

Location:
ndgCommon/trunk/ndg/common
Files:
1 added
4 edited

Legend:

Unmodified
Added
Removed
  • ndgCommon/trunk/ndg/common/src/lib/granulite.py

    r4995 r5185  
    1313from ndg.common.src.models.vocabtermdata import VocabTermData as VTD 
    1414from ndg.common.src.clients.xmldb.eXist.atomclient import AtomClient 
     15from ndg.common.src.clients.xmldb.abstractxmldbatomclient import DuplicateError 
    1516 
    1617class granulite(object): 
     
    3334     
    3435    # need to distinguise coverage data between spatial and temporal data - use these variables to do so 
     36    # NB, other_spatial is for spatial resolution and vertical extent data 
    3537    TEMPORAL_DATA = "temporal_data" 
    3638    SPATIAL_DATA = "spatial_data" 
     39    OTHER_SPATIAL_DATA = "other_spatial" 
    3740 
    3841    # group the data together as either single valued or array valued - to ease setting attributes on Atom 
     
    107110            self._eXist = eXistClient 
    108111        else: 
    109             self._eXist = AtomClient(configFile = self.DBCONFIG_FILE) 
     112            self._eXist = AtomClient(configFileName = self.DBCONFIG_FILE) 
    110113         
    111114        # override CSML/CDML data specified in the granulite file with data input directly 
     
    221224                if line.lower().find('time') > -1: 
    222225                    coverageType = self.TEMPORAL_DATA 
     226                elif line.lower().startswith(self.OTHER_SPATIAL_DATA.lower()): 
     227                    coverageType = self.OTHER_SPATIAL_DATA 
    223228                 
    224229                # initialise dictionary array if required 
     
    314319        if self.TEMPORAL_DATA in granulite_data: 
    315320            self._extractTemporalData(granulite_data[self.TEMPORAL_DATA][0]) 
     321        if self.OTHER_SPATIAL_DATA in granulite_data: 
     322            data = utilities.getTripleData(granulite_data[self.OTHER_SPATIAL_DATA][0]) 
     323            self._atom.ME.spatialResolution = data[1] 
     324            self._atom.ME.verticalExtent = data[2] 
    316325 
    317326        logging.info("All input data set up") 
     
    744753    try: 
    745754        g.processGranulite() 
    746     except edc.DuplicateError, e: 
     755    except DuplicateError, e: 
    747756        # allow the user to specify if they want to overwrite the duplicated atom 
    748757        print e.message 
     
    750759        if input.strip().upper() == 'Y': 
    751760            print "OK - replacing old granule atom..." 
     761            g = granulite(args[0], replaceAtom = isReplace, deleteMode = isDelete) 
    752762            g.processGranulite(replaceAtom = True) 
    753763        else: 
  • ndgCommon/trunk/ndg/common/unittests/lib/testgranulite.py

    r5012 r5185  
    5959            self.assertEqual(-3.1640625, atom.maxX) 
    6060            self.assertEqual(-17.578125, atom.minY) 
     61            self.assertEqual(tc.VERTICAL_EXTENT, atom.ME.verticalExtent) 
     62            self.assertEqual(tc.SPATIAL_RESOLUTION, atom.ME.spatialResolution) 
    6163 
    6264        except Exception, e: 
     
    6971         
    7072         
    71     def testDuplicateProcessGranulite(self): 
     73    def otestDuplicateProcessGranulite(self): 
    7274        atom = None 
    7375        try: 
     
    8789            self.deleteGranuliteDEs() 
    8890         
    89     def testProcessCSMLOrCDMLFile(self): 
     91    def otestProcessCSMLOrCDMLFile(self): 
    9092        try: 
    9193            atom = self.g.processCSMLOrCDMLFile() 
     
    9597         
    9698         
    97     def testGetSectionName(self): 
     99    def otestGetSectionName(self): 
    98100        sectionName = "parameters" 
    99101        foundName = self.g._granulite__getSectionName(sectionName + "::") 
    100102        self.assertEqual(sectionName, foundName) 
    101103         
    102     def testGetInvalidSectionName(self): 
     104    def otestGetInvalidSectionName(self): 
    103105        sectionName = "parameters" 
    104106        foundName = self.g._granulite__getSectionName(sectionName) 
    105107        self.assertEqual(None, foundName) 
    106108         
    107     def testInitialiseGranule(self): 
     109    def otestInitialiseGranule(self): 
    108110        self.g._granulite__initialiseGranule() 
    109111        self.assertNotEqual(None, self.g._atom) 
     
    114116         
    115117 
    116     def testGetGranuliteDetails(self): 
     118    def otestGetGranuliteDetails(self): 
    117119        details = self._initGranule() 
    118120        self.assertEqual(tc.GRANULITE_TITLE, details['granule_info'][0].split('|')[2].strip()) 
     
    120122        self.assertEqual(tc.GRANULITE_CDML_DATASETID, details['cdml_file'][0].split('|')[1].strip()) 
    121123 
    122     def testApplyCoreGranuliteDetails(self): 
     124    def otestApplyCoreGranuliteDetails(self): 
    123125        details = self._initGranule() 
    124126        self.g.ingestGranuliteFiles = False # don't worry about reading in CSML/CDML data 
     
    128130        self.assertEqual(tc.GRANULITE_PROVIDER_ID, self.g._atom.ME.providerID) 
    129131 
    130     def testApplyGranuliteDetails(self): 
     132    def otestApplyGranuliteDetails(self): 
    131133        details = self._initGranule() 
    132134        self.g.ingestGranuliteFiles = False # don't worry about reading in CSML/CDML data 
     
    142144         
    143145 
    144     def testExtractSpatialData(self): 
     146    def otestExtractSpatialData(self): 
    145147        self._initGranule() 
    146148        self.g._extractSpatialData("POLYGON((-8.26171875 -11.25,-9.140625 -17.40234375,-3.33984375 -17.578125,-3.1640625 -12.65625,-8.26171875 -11.25))") 
     
    151153 
    152154 
    153     def testUpdateDataEntity(self): 
     155    def otestUpdateDataEntity(self): 
    154156        # firstly create a DE to use 
    155157        try: 
     
    184186 
    185187 
    186     def testAddGranuleToDataEntityRecords(self): 
     188    def otestAddGranuleToDataEntityRecords(self): 
    187189        # firstly create a DE to use 
    188190        atom = Atom(VTD.DE_TERM) 
  • ndgCommon/trunk/ndg/common/unittests/testdata/example.granulite

    r4946 r5185  
    1111# use format: local id | provider id 
    1212# NB, can specify multiple entities, on new lines, to link the granule to 
    13 dataent_NERC-ASSIM | badc.nerc.ac.uk 
     13DE_e7fb7c64-f8fe-11dd-b220-00e081470264 | neodc.nerc.ac.uk 
    1414#testcloudmap | badc.nerc.ac.uk 
    1515 
     
    125125 
    126126coverage:: 
    127 # NB, can specify both timerange and spatialrange data 
     127# specify spatial resolution and/or vertical extent using format: 
     128# other_spatial | <spatial resolution | vertical extent 
    128129POLYGON((-8.26171875 -11.25,-9.140625 -17.40234375,-3.33984375 -17.578125,-3.1640625 -12.65625,-8.26171875 -11.25)) 
    129130TIMERANGE(1996-4-19, 1998-9-22) 
     131other_spatial | quite detailed | higher than you might think 
  • ndgCommon/trunk/ndg/common/unittests/testdata/valid_example.granulite

    r4997 r5185  
    1 cdml_file:: 
     1#cdml_file:: 
    22# Note, CDML files are used by the script to generate CSML files  
    33# (which are stored alongside the CDML file) - so you cannot  
    44# specify both at the same time here 
    5 ../testdata/test_cdml_hadgem1_aecan-apa.xml | test_hadgem1_dataset | time0 
     5#../testdata/test_cdml_hadgem1_aecan-apa.xml | test_hadgem1_dataset | time0 
    66 
    77#csml_file:: 
     
    1111# use format: local id | provider id 
    1212# NB, can specify multiple entities, on new lines, to link the granule to 
    13 DE_ac3bdf56-b8e4-102c-8001-001e4f9f5ef4 | badc.nerc.ac.uk 
     13dataent_UGAMPO3 | badc.nerc.ac.uk 
    1414#testcloudmap | badc.nerc.ac.uk 
    1515 
     
    9999coverage:: 
    100100# NB, can specify both timerange and spatialrange data 
     101# specify spatial resolution and/or vertical extent using format: 
     102# other_spatial | <spatial resolution | vertical extent 
    101103POLYGON((-8.26171875 -11.25,-9.140625 -17.40234375,-3.33984375 -17.578125,-3.1640625 -12.65625,-8.26171875 -11.25)) 
    102104TIMERANGE(1996-4-19, 1998-9-22) 
     105other_spatial | quite detailed | higher than you might think 
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